Program

Proceedings on ACL anthology: http://aclweb.org/anthology/W18-56

October 31, 2018

9:00–10:30 Session 1 (chair: Yoshinobu Kano)

9:00 Introduction

9:05 Detecting Diabetes Risk from Social Media Activity

Dane Bell, Egoitz Laparra, Aditya Kousik, Terron Ishihara, Mihai Surdeanu and Stephen Kobourov

9:30 Treatment Side Effect Prediction from Online User-generated Content

Hoang Nguyen, Kazunari Sugiyama, Min-Yen Kan and Kishaloy Halder

9:55 Poster booster

10:15 Poster session

Revisiting neural relation classification in clinical notes with external information

Simon Suster, Madhumita Sushil and Walter Daelemans

Supervised Machine Learning for Extractive Query Based Summarisation of Biomedical Data

Mandeep Kaur and Diego Molla

Comparing CNN and LSTM character-level embeddings in BiLSTM-CRF models for chemical and disease named entity recognition

Zenan Zhai, Dat Quoc Nguyen and Karin Verspoor

Deep learning for language understanding of mental health concepts derived from Cognitive Behavioural Therapy

Lina M. Rojas Barahona, Bo-Hsiang Tseng, Yinpei Dai, Clare Mansfield, Osman Ramadan, Stefan Ultes, Michael Crawford and Milica Gasic

Investigating the Challenges of Temporal Relation Extraction from Clinical Text

Diana Galvan, Naoaki Okazaki, Koji Matsuda and Kentaro Inui

De-identifying Free Text of Japanese Dummy Electronic Health Records

Kohei Kajiyama, Hiromasa Horiguchi, Takashi Okumura, Mizuki Morita and Yoshinobu Kano

Unsupervised Identification of Study Descriptors in Toxicology Research: An Experimental Study

Drahomira Herrmannova, Steven Young, Robert Patton, Christopher Stahl, Nicole Kleinstreuer and Mary Wolfe

Identification of Parallel Sentences in Comparable Monolingual Corpora from Different Registers

Rémi Cardon and Natalia Grabar

Evaluation of a Prototype System that Automatically Assigns Subject Headings to Nursing Narratives Using Recurrent Neural Network

Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Petri Loukasmäki, Tapio Salakoski, Filip Ginter and Sanna Salanterä

Automatically Detecting the Position and Type of Psychiatric Evaluation Report Sections

Deya Banisakher, Naphtali Rishe and Mark A. Finlayson

10:30–11:00 Break

11:00–12:30 Session 2 (chair: Timothy Miller)

11:00 Iterative development of family history annotation guidelines using a synthetic corpus of clinical text

Taraka Rama, Pål Brekke, Øystein Nytrø and Lilja Øvrelid

11:25 CAS: French Corpus with Clinical Cases

Natalia Grabar, Vincent Claveau and Clément Dalloux

11:40 Analysis of Risk Factor Domains in Psychosis Patient Health Records

Eben Holderness, Nicholas Miller, Kirsten Bolton, Philip Cawkwell, Marie Meteer, James Pustejovsky and Mei Hua-Hall

12:05 Patient Risk Assessment and Warning Symptom Detection Using Deep Attention-Based Neural Networks

Ivan Girardi, Pengfei Ji, An-phi Nguyen, Nora Hollenstein, Adam Ivankay, Lorenz Kuhn, Chiara Marchiori and Ce Zhang

12:30–14:00 Lunch

14:00–15:30 Session 3 (chair: Julien Tourille)

14:00 Invited Talk - Distributed text mining in healthcare: linking data, methods and people

Goran Nenadic

14:50 Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction

Joël Legrand, Yannick Toussaint, Chedy Raïssi and Adrien Coulet

15:15 In-domain Context-aware Token Embeddings Improve Biomedical Named Entity Recognition

Golnar Sheikhshabbafghi, Inanc Birol and Anoop Sarkar

15:30–16:00 Break

16:00–17:30 Session 4 (chair: Diego Molla)

16:00 Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction

Chen Lin, Timothy Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard and Guergana Savova

16:25 Listwise temporal ordering of events in clinical notes

Serena Jeblee and Graeme Hirst

16:40 Time Expressions in Mental Health Records for Symptom Onset Extraction

Natalia Viani, Lucia Yin, Joyce Kam, Ayunni Alawi, André Bittar, Rina Dutta, Rashmi Patel, Robert Stewart and Sumithra Velupillai

16:55 Evaluation of a Sequence Tagging Tool for Biomedical Texts

Julien Tourille, Matthieu Doutreligne, Olivier Ferret, Aurélie Névéol, Nicolas Paris and Xavier Tannier

17:10 Learning to Summarize Radiology Findings

Yuhao Zhang, Daisy Yi Ding, Tianpei Qian, Christopher D. Manning and Curtis P. Langlotz